HDF  !`TREEHEAPXminc-2.0@pTREE HEAPX(dimensionsinfoimage0SNOD Pp TREEx8HEAPX yspacexspacezspace8SNOD( 0 X x TREE@HEAPX processing@8TREEpHEAPXX0HTREEDHEAPX0image-minimage-maximage(SNODL Pident,claude:bigbrain:2012.08.09.20.10.38:30525:1 Q$P `transformation0-filename'/tmp/align_occipital.pl-Jio5/part1.xfm(SNOD( transformation0-filedataMNI Transform File %Wed Jan 13 18:29:21 2010>>> minctracc -clobber -xcorr -lsq6 -step 0.125 0.125 0 -simplex 1 -tol 0.004 -w_translations 1 1 0 -w_rotations 0.0 0.0 0.0174533 -w_scales 0.02 0.02 0.0 -transformation /tmp/bestlinreg_small.pl-AUO48kfe/Spm0001o_3.xfm /tmp/bestlinreg_small.pl-AUO48kfe/Spm0001o_0.25_blur.mnc /tmp/bestlinreg_small.pl-AUO48kfe/Tpm0002z_0.25_blur.mnc /tmp/align_occipital.pl-Jio5/part1.xfm %(Package mni_autoreg 0.99.6, compiled by @bigbrain (x86_64-unknown-linux-gnu) on Fri Nov 20 22:26:11 EST 2009) Transform_Type = Linear; Linear_Transform = 0.994658172130585 -0.103223450481892 0 -0.903919398784637 0.103223450481892 0.994658172130585 0 -0.818237662315369 0 0 1 0; `transformation1-filename'/tmp/align_occipital.pl-z3Z6/part1.xfm transformation1-filedataMNI Transform File %Tue Jan 19 15:37:28 2010>>> minctracc -clobber -xcorr -lsq6 -step 0.125 0.125 0 -simplex 1 -tol 0.004 -w_translations 1 1 0 -w_rotations 0.0 0.0 0.0174533 -w_scales 0.02 0.02 0.0 -transformation /tmp/bestlinreg_small.pl-uSAkI5En/Spm0001o_3.xfm /tmp/bestlinreg_small.pl-uSAkI5En/Spm0001o_0.25_blur.mnc /tmp/bestlinreg_small.pl-uSAkI5En/Tpm0002z_0.25_blur.mnc /tmp/align_occipital.pl-z3Z6/part1.xfm %(Package mni_autoreg 0.99.6, compiled by @bigbrain (x86_64-unknown-linux-gnu) on Fri Nov 20 22:26:11 EST 2009) Transform_Type = Linear; Linear_Transform = 0.999920427799225 -0.0126154152676463 0 -0.0642909705638885 0.0126154152676463 0.999920427799225 0 0.0571307353675365 0 0 1 0; Htransformation2-filename/tmp/part1.xfm transformation2-filedataMNI Transform File %Thu Mar 24 13:08:32 2011>>> minctracc -clobber -xcorr -lsq6 -step 0.125 0.125 0 -simplex 1 -tol 0.004 -w_translations 1 1 0 -w_rotations 0.0 0.0 0.0174533 -w_scales 0.02 0.02 0.0 -transformation /tmp/bestlinreg_small.pl-3jqzoKcl/Spm0001o_3.xfm /tmp/bestlinreg_small.pl-3jqzoKcl/Spm0001o_0.25_blur.mnc /tmp/bestlinreg_small.pl-3jqzoKcl/Tpm0002z_0.25_blur.mnc /tmp/part1.xfm %(Package mni_autoreg 0.99.6, compiled by @bigbrain (x86_64-unknown-linux-gnu) on Thu Jul 8 19:39:26 EDT 2010) Transform_Type = Linear; Linear_Transform = 0.999955713748932 -0.00941364001482725 0 -0.834380030632019 0.00941364001482725 0.999955713748932 0 6.4244236946106 0 0 1 0; transformation3-filenameJ/mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/pm0001.xfm transformation3-filedataLMNI Transform File %Mon May 21 19:19:06 2012>>> param2xfm -clobber -center 0.00000 0.00000 0.00000 -translation 3.09297 -0.60542 0.00000 -rotation -0.00000 -0.00000 7.15825 -scale 1.00000 1.00000 1.00000 -shear 0.00000 0.00000 0.00000 /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/pm0001.xfm %(Package mni_autoreg 0.99.6, compiled by @ip03 (x86_64-unknown-linux-gnu) on Thu Jul 8 17:19:09 EDT 2010) Transform_Type = Linear; Linear_Transform = 0.992205739021301 -0.124610267579556 0 3.09296989440918 0.124610267579556 0.992205739021301 0 -0.605419993400574 0 0 1 0; transformation4-filenameJ/mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/pm0001.xfm 0transformation4-filedataMNI Transform File %Fri Jun 1 03:44:58 2012>>> minctracc -clobber -nonlinear corrcoeff -stiffness 1 -similarity 0.01 -iterations 5 -weight 0.9 -step 0.0625 0.0625 1 -sub_lattice 5 -lattice_diam 0.1875 0.1875 1 -transformation /ltmp/lepagecl/slicenlreg_grad.pl-3B04vUDX/Spm0001o_11.xfm /ltmp/lepagecl/slicenlreg_grad.pl-3B04vUDX/Spm0001o_0.03125_dxyz.mnc /ltmp/lepagecl/slicenlreg_grad.pl-3B04vUDX/Tavg_0001_0.03125_dxyz.mnc /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/new/pm0001.xfm %(Package mni_autoreg 0.99.6, compiled by @ip03 (x86_64-unknown-linux-gnu) on Thu Jul 8 17:19:09 EDT 2010) Transform_Type = Linear; Linear_Transform = 1 0 0 0 0 1 0 0 0 0 1 0; Transform_Type = Grid_Transform; Displacement_Volume = pm0001_grid_0.mnc; transformation5-filenameN/mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/rsl/flipyz.xfm transformation5-filedata\MNI Transform File Transform_Type = Linear; Linear_Transform = 1 0 0 0 0 0 1 0 0 1 0 0; TREEP`Hx^1 Om _* ?@4 4Q$P 0 length  8varidMINC standard variable9SNOD<`7 @ 0vartypedimension____ 8versionMINC Version 1.0 X comments/Y increases from patient posterior to anterior 0spacing regular__ 0 alignmentcentre 0 dimorderyspace `direction_cosines ?@4 4? (unitsmm 8 spacetype native____ 8start ?@4 4 8step ?@4 4{Gz?x ?@4 4Q$P 0 length  8varidMINC standard variable 0vartypedimension____ 8versionMINC Version 1.0 P comments'X increases from patient left to right 0spacing regular__ 0 alignmentcentre `direction_cosines ?@4 4? (unitsmm 8 spacetype native____ 8step ?@4 4e? 8start ?@4 4 ?@4 4Q$P 0 length O 8varidMINC standard variable 0vartypedimension____ 8versionMINC Version 1.0 X comments.Z increases from patient inferior to superior 0spacing regular__ 0 alignmentcentre `direction_cosines ?@4 4? (unitsmm 8 spacetype native____ 8step ?@4 4e? 8start ?@4 4 qcM  ?@4 4 deflateH)Q$P 0 dimorderyspaceFSNOD(XJFC 8varidMINC standard variable 8versionMINC Version 1.0 0vartypevar_attribute  ?@4 4 deflate[Q$P 0 dimorderyspace 8varidMINC standard variable 8versionMINC Version 1.0 0vartypevar_attributex^1 Om x4`x^1 J8@<:Nm۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶m۶^H^ @ O deflate cWOQ$P @ dimorderyspace,xspace,zspace 8varidMINC standard variable 0vartypegroup________ 8versionMINC Version 1.0 P valid_range ?@4 4@ 0 completetrue_Hh historyWed Jan 13 18:28:15 2010>>> minccalc -expr if(A[1]>0.5){A[0]}else{0} pm0001o.mnc ttt.mnc tttt.mnc -quiet Wed Jan 13 18:29:22 2010>>> mincresample -clobber -quiet -transform /tmp/align_occipital.pl-Jio5/part1.xfm -keep_real_range -range 0 65535 -tricubic -like /data/BIG_BRAIN/pm3903/postmortem/mnc_original/pm0001o.mnc /data/BIG_BRAIN/pm3903/postmortem/mnc_original/pm0001o.mnc /data/BIG_BRAIN/pm3903/postmortem/mnc_original/pm0001z.mnc Tue Jan 19 15:37:28 2010>>> mincresample -clobber -quiet -transform /tmp/align_occipital.pl-z3Z6/part1.xfm -keep_real_range -range 0 65535 -tricubic -like /data/BIG_BRAIN/pm3903/postmortem/mnc_original/pm0001o.mnc /data/BIG_BRAIN/pm3903/postmortem/mnc_original/pm0001o.mnc /data/BIG_BRAIN/pm3903/postmortem/mnc_original/pm0001z.mnc Thu Mar 24 13:08:32 2011>>> mincresample -clobber -quiet -transform /tmp/part1.xfm -keep_real_range -range 0 65535 -tricubic -like /tmp/pm0001_centered.mnc /data/BIG_BRAIN/pm3903/postmortem//mnc_original/pm0001o.mnc /data/BIG_BRAIN/pm3903/postmortem//mnc_original/pm0001z.mnc Mon May 21 19:35:45 2012>>> mincresample -quiet -clobber -transform /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/pm0001.xfm -like /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/template.mnc -keep_real_range -range 0 65535 -tricubic /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mnc_fixed/pm0001o.mnc /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/pm0001o.mnc Tue Jun 5 16:05:54 2012>>> mincresample -quiet -clobber -transform /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/pm0001.xfm -like /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/rsl/template.mnc -keep_real_range -range 0 65535 -tricubic /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/pm0001o.mnc /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//tmp/rsl0001/pm0001o_xy.mnc Tue Jun 5 16:06:25 2012>>> mincresample -quiet -clobber -unsigned -short -nearest -use_input_sampling -transform /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/rsl/flipyz.xfm -keep_real_range -start -70.6666 0 -58.7777 -nelements 6572 1 5711 -step 0.0211666666666666 0.02 0.0211666666666666 -range 0 65535 /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//tmp/rsl0001/pm0001o_xy.mnc /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/rsl/pm0001o.mnc Tue Jun 5 16:06:30 2012>>> minclookup -clob -quiet -lookup_table /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/histogram/h0001.lup -range 0 65535 -continuous /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//mri_transform/rsl/pm0001o.mnc /mnt/scratch_mp2/evans/lepagecl/BIGBRAIN/pm3903//tmp/rsl0001/pm0001o_norm.mnc Tue Aug 7 12:48:33 2012>>> mincconvert -clob /sdata/SCRATCH/claude/A3D/model7400/coronal/pm0001o.mnc /sdata/SCRATCH/claude/A3D/model7400/tmp/pm0001x.mnc Tue Aug 7 12:48:34 2012>>> mincreshape -clob -quiet -dimorder xspace,yspace,zspace /sdata/SCRATCH/claude/A3D/model7400/tmp/pm0001x.mnc /sdata/SCRATCH/claude/A3D/model7400/tmp/pm0001o.mnc Thu Aug 9 20:02:01 2012>>> mincreshape -clob -quiet -unsigned -short -image_range 0 65535 -valid_range 0 65535 -start 4867,0,0 -count 5,1,5711 -dimorder yspace,xspace,zspace /sdata/SCRATCH/claude/A3D/model7400/coronal-xyz/pm0001o.mnc /sdata/SCRATCH/claude/A3D/model7400/tmp4867/pm0001o.mnc Thu Aug 9 20:07:42 2012>>> mincconcat -clob -quiet -unsigned -short -filelist /sdata/SCRATCH/claude/A3D/model7400/tmp4867/list -concat_dimension yspace -sequential /sdata/SCRATCH/claude/A3D/model7400/tmp4867/new.mnc Thu Aug 9 20:10:38 2012>>> mincreshape -clob -quiet -unsigned -short -start 0,1,0 -count 7404,1,5711 -dimorder yspace,xspace,zspace /sdata/SCRATCH/claude/A3D/model7400/tmp4867/new.mnc /sdata/SCRATCH/claude/A3D/model7400/sagittal/mnc/pm4869o.mnc TREEvHTREEx_?lOx^1 Om _*x^{U3|y(*8}Cv eЫ#Z2ţjFlߣFl8??d?1+4{GL)WbGu%u MZ:)4sDiEm^{B'PB()S0F^Z<ѱѷ}.j|gr͕{7yk'*+jȖ7GVR1_(w̬_T*[_P8rNYIw.PQUSnTU *9*꘧ "hr褢#CjCZumΩ_v5읝ٱ'[үWS<`Xmհ O*h2{{my PSY1sF/9hA$U3J/p_.;lI9KS 'iZ4S/D "ʅz +jR[]0pq{b;)eSwՖ/ԷuGde;|jZ&p^#wf#Nm?k.qɬVIIIQhHh )SzE6jT(Э^]?/r; )+yDh;y'l5oçȝܒ<5nvϗqԡ /y٣v/o`zʩ'?Xyו J>.>o84/_U/_1o`Bߘɡ1 >_ؠ$w]eU[VN;nȑoy;6`bu7ؓN7혙[ft^0ᩃc;#GDڂ%=nɯId^K?*+uhzufj8%yK^Y㲉 uM?rwYmzCš{.p1 '^R{g͙]pC=26bg(:影LJ&5ϯ>;\7ۏ︫~۳izAbh9lq⥩goN8PLI;sg˃5G^k8=:XOչ}.ylmgw|A/On;5;=h\7#'NTd O$௨ggcE&W\ NI-|l΄-/:2/Շ_umԸҾV_˻KÓڶһSwL?7~ClVP<.x`y1ж1 Ӈ'G'Ď <툷K? O<\-p'#SsRgw-ʏunLmUf]8cvߑ=taVL(+G..obAԓxeeܦ'>[j!nۑDӮnOҧϋL h=,5v$ְ#l=2ȥFiv|Ӯ_llr~L4r9Ѯ2ezcc>}6θ z e9bY.*}P,`CN*ys_ȝq^ޝrNNMH۷ee >,˦2Sswgw.KHZÉG"ϴ'Og=p`WW2n}>y9QvsvTraA仉hbs,HW odOM<> 8]IT~8޶:ܗrԡ]̟<:x4="l~SS+rXhiP޻%@rw)WC L NO?)⛳͜dDg^eѕRַ[7b^vjnz~ƒtm o V7}ultIȆRkRK?t<[J-߅$ħ-3ϘȪ5K<7}{s]]gzoSeӫZ7|(VfM{V,oHO Nsߓ}܅{<0‰!+ M&t.Iքr`Xu$E<'zۚ_o>SwǏcƧZ/EB-Eh~袆)~rKːѺmMoԝ֜hF3Âo%g%{w&mzײ3+mn/Mom/J>q̖GX?d;+|i?pպw-=EƗvE\/v~eۍHzy +dWd^Hm2O[6r`N򙓻Jg7cm㻿Swswn Ojۙ&:+/ U6nnZSmSlZ{6994ٓT,mJ]]k{/kۑ}8ѕ.sUjCzkbeNiۜ'DGKǏnhndG,n]g:wĬn=ē9Wq\{ʶWYd/WTڏ,~kͳ]bG'1/R7nߓ(@Ov۾/ӟ Vn 5WV7L ; x^uT7}qwk޽ݮ3=>0kpIpCp@p=}.uS9OݽWvP_ }Ёf _gl%X78ʴ/uML/m' -mg1+B.-82BXW^{"7F!C.v v8U#EiR̨k(~RM]2é7 YZa|d$v>$z&nv:8[Lq<#DNJ6,TVú~&S-tI&?W5:*yZ|Q o\7u$2=z}qb Rfj3ٯef ˜=y퓖elQ-"U7<."d5Ϟ%ۼR[]~y@D)g94u {}1~زۺvU6oXYS**ج~O(LG?ճٳƹ)M+ ϫ7m|BU׏(TQq%T歔6(^1=>C*۲_]m˺ivaӻ\oaz}FOLZYCJDćIvIքF1"OEO|SɘkWFFD]`J^'iBBiC1XT*V=[LvEYIIfTT9ʯVӫH]rESy0X~04- r25mRnIɍY:LsM;ԑ%}Nƾ?jùmGLK]9x[xZ`.p=5Mp],:*ttbuV(՗1xy&PL׹[E*:B܅iəomL_# ޖ+Cεdov49~dYVߌ_#'^n$*],=0IVy۔2ѓ"=ʏ3qxtdfl"!mfCy}>\dEF wrKg}s#q0yJ 2c~R]_̦v*jNaUKTGBdkjbf3%'gFoEchAi"l:Aw6CZ^sK~/g qZκ۬ܲFiΟI1;{t[^e̛xE%=x3t8E=Yzj }ZͩqiI3L贡aOMTc:|0nAx!citնƩS6'MH;(hG45k#E]Hn(]&}0Wc#5'ՀMŵs}0ZUuݦZs:k.$r9-eeUS˷tbU5i"{]8CǶMV֙wQfj'\t$[O&8_{ @c'{m>f> w,2q,o{9֟i݅A5 g|s RJ-k\cٲsKeIXѢtE&4!L!w"+eI:ݬi=S 3.1A~,3ogwhr7Qکxw◉E8]JeڦͲʅ Q%,;Oz^ewծstF-.oiy$%hbW^՜3"\ߓX4.f򪗶w*ZիteEPhrϹ Ze~o3g^[>fiZD3k}ܶvJ~g1_s:qʂҜ4rlvHskHFm1_XB<E\d~C?@inuֹ[ rQ/k%Q C@_155<̊5⻲SMd2[ӈղI]EKWS[*͇/lц4S Ǖ2Y[0e\|OuYbvR>"~M!W:BӘU򌺵vd$ --5S M!Q\;^=Nu. |ɜshmU]4[RZU/QEs}hm=C,橨\3\2ŬecI .HI_1k uj7J>R4YʉNR{:C|ٱN,s!7oN)t1Ocٿps~v] ކn7tJ465L6eN>3+mv}uekW>ؓh5]Yhd'N֑uD.QK&^2»&\)?|p_y'u~?<\K׬ s wr-oRhUSlJa+wi6h~i;9iޭމ=n/]2-Zڇo !M;-&1)֏* ٱ{?rS֧vQ4*ꄌ)j9U;mxXʍCWeN)/D)3#%ۚ-! ԟ3Ih,GWYR^LV՚U#ŗۊ2NoOtE3]Jtkf24T]YJhHk?,DLr״?%%Ke M9`N,X%Y,(m=4[]q-iol< PT'Z鶬lNljFoW=VP9ԗoS* EioE󽻊(mos9Bkϴ.:kO Iv4ݖ/sMFiꃔ":ɬXC9c*[ =ujmeIWLT>UNUU=~^**m"W/MLSztOma$BYj0QOX&V -A[Z#K i\_[RI_VR